Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
UCEC rs143492842 chr6:74807291 T/C 6.47E-7 166 22.57 22.63 10.33 KM Plot
UCEC rs143561603 chr19:315179 AC/A 2.91E-6 171 24.02 19.1 11.6 KM Plot
UCEC rs143778710 chr17:30419111 CAG/C 7.73E-6 173 22.63 22.78 15.77 KM Plot
UCEC rs143892259 chr5:77733799 T/C 7.37E-5 170 18.37 26.07 21.5 KM Plot
UCEC rs143941642 chr5:54374233 T/A 1.43E-11 174 21.08 28.03 18.47 KM Plot
UCEC rs144025841 chr19:315136 G/A 1.25E-5 171 24.35 19.1 11.6 KM Plot
UCEC rs144300131 chr11:62131524 G/A 1.3E-11 172 22.57 26.9 4.33 KM Plot
UCEC rs1444432 chr16:86799854 C/T 3.17E-5 174 22.38 24.63 4.33 KM Plot
UCEC rs144815380 chr3:48064215 C/G 7.73E-7 171 22.6 22.25 11.53 KM Plot
UCEC rs145120147 chr11:107932621 GGAGAGA/G 5.0E-9 170 22.57 21.6 2.45 KM Plot
UCEC rs145395042 chr3:48130012 C/T 6.79E-6 172 22.6 21.6 11.53 KM Plot
UCEC rs145409609 chr14:73527693 C/CTT 5.86E-7 172 22.38 22.63 10.33 KM Plot
UCEC rs145527631 chr5:54438132 AC/A 5.51E-7 172 21.55 23.43 20.33 KM Plot
UCEC rs145634432 chr15:84744909 G/T 6.18E-11 172 7.95 27.43 22.6 KM Plot
UCEC rs145720381 chr5:77687273 G/C 5.99E-5 169 21.55 25.3 16.3 KM Plot